Basic Information | |
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Taxon OID | 3300024348 Open in IMG/M |
Scaffold ID | Ga0244776_10415429 Open in IMG/M |
Source Dataset Name | 0.2um to 3um size fraction coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 889 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018714 | Metagenome | 233 | Y |
F058143 | Metagenome / Metatranscriptome | 135 | N |
F093863 | Metagenome / Metatranscriptome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0244776_104154292 | F093863 | GAGG | MTNLINKLLAKFNLKLVYIKQKPDTSMVEATVKFLNTVPKRYMKNNIFLPLYVGDVKYLKERVDDEFPQVSGETYYKSQHSQYEKYFCDYNADEKTLSKEDLKKIYDETTFTTEQLKNKL |
Ga0244776_104154293 | F058143 | N/A | MILERTADLQILTDDKQTYYRISYNDEFQYVSWFRREYSVLYPVDAALYDTLTQKHFEVLND |
Ga0244776_104154294 | F018714 | GAGG | MTDFEYHKTLVIGVIIGASVCILGFYMLKPENPPVTPKTNFAVVDTYKGCDIVQWTDGMQDEFKYFLDCSK |
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