Scaffold Ga0244776_10153120

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10153120
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1677
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F036237	Metagenome / Metatranscriptome	170	Y
F038241	Metagenome / Metatranscriptome	166	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_101531201	F036237	N/A	GEMLVEDWVNSNLDEGQMYADFRFAEMSDNNYLKGRFNQFYELKEGDQYYLEWNEEL
Ga0244776_101531202	F038241	GAGG	MLGYSKTDLDEMINSVHDAKLFYIRNSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD
Ga0244776_101531203	F063705	N/A	MTKSSMFLEYMKLHLISLNQDWEDTKNGAPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERYE
Ga0244776_101531204	F000263	AGG	MNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARNEA