Scaffold Ga0244776_10130807

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10130807
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1847
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006200	Metagenome / Metatranscriptome	379	Y
F013232	Metagenome / Metatranscriptome	273	Y
F057685	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_101308072	F006200	N/A	MANKTEDWLEQLVKKYSIPTQEKTDKRGILNESQLNNLKNGKN
Ga0244776_101308073	F057685	N/A	VGSNVDASWTCGCGSLNAGWRTTCGGCEEREIMENKTPRKDLLKILNTIKEDFTMLQDGSWSLQYSDGSEIEASLDNVDKAIEIVNKDLYGK
Ga0244776_101308074	F013232	N/A	MSDREIMNAKSGVPMWWKPGIAFLKEDWINHPHLKQFRDKKCTQRSCNCESPKIVNLWEHDSCVRGRIDTDVCVKCNEVESFSIIR