Scaffold Ga0244776_10111741

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10111741
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2031
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008689	Metagenome	329	Y
F013760	Metagenome / Metatranscriptome	268	Y
F028165	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_101117415	F028165	GAGG	MAIAFSIEEKKERIRQAMEIYATTGSWSNADNIVRRQSVEKWIRNTELLAYAQSLGYQQMCTDEVATFAPPTAHYSHRMIFSAALIHLKESRYVCRDGARIHYAISHGQLVMYKLDGAGTRHHAGPAYFRGADILANDWMIIR
Ga0244776_101117417	F008689	AGG	MRFGDVVQALMAGGGNAVWRGEWGGAVFLRYSEVWNIFELHGPKGRVTQLEELSLSPGDLFANDWALVAIDPRTGEVAK
Ga0244776_101117418	F013760	GGAGG	MITFALGILMGAGCLVIYNEMYTRWLYADVKRRAKQQGISDRQMKDALVWATKEEIEAKLIGK