Scaffold Ga0244776_10098195

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10098195
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2193
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004667	Metagenome	428	Y
F009514	Metagenome	316	N
F017297	Metagenome	241	Y
F048999	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_100981952	F004667	AGG	MARPPKVDTVQFRRKLDNPKLQILLSAGQGNISQGFENLLSLYQHLHGIGYRTDSPLESIGLVTNLAESKRDSPSQVIQ
Ga0244776_100981953	F017297	AGG	MKITEQKNGDYTTFERVAHNGYYIVKVYKNGGLVDKVMTDTYQAAREYLKCFNLIAKNG
Ga0244776_100981957	F009514	AGG	MTKNQILALQSIGKGIIEAANIDSIGAPSGVIYSALMSHGATLNQFQQIMSTLERHGFLSHDVDASTYHATEAGLQWANKV
Ga0244776_100981958	F048999	AGG	MITITLHQKTDNDGWQTIKSLPIDSAQWCKIDRSWIDTLMESGSMVITIGHTMYSIDKN