Scaffold Ga0244776_10090110

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10090110
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2312
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F007644	Metagenome / Metatranscriptome	347	Y
F023344	Metagenome / Metatranscriptome	210	Y
F038241	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1009011010	F000311	GAG	MYFELTAPNRLSMEMAYWDAQITGLDPQAMDSLTFNIGTGSIEKVSRLRDKFNLKETYVSDYEPTGYQRS
Ga0244776_100901102	F007644	AGGA	MTKSSYFLEYMKLHLISLEQDLEENPASIHVVDIEGQIYATRHLLSVATDIMNSTNERYNNDNI
Ga0244776_100901104	F038241	GGAGG	MLGYTKTDLDEMINSVHDAKLFYIRNSDVEQVDQDPLVEGLLKANDFLQGLWAEGYFD
Ga0244776_100901106	F023344	AGGAG	MEAFTDTVGEHILGAIQVDIEQHLFEQWNNANLDEGSAFAEYKFMQFAPDNLKQSYNEYYGYIEGDEFLL
Ga0244776_100901107	F000450	AGGCGG	MGDRANFVFVDSKGQSIVLYGHWAGHNMLSNLADAVIAARPRWTDESYATRIAISQLVGDQWNMETGWGLQVNSISDNEHKIPVIDFNQQTFSLHEQDDWANVQNKVRGMKNEAIFTQDLTSFCEKYADKLVSV