Scaffold Ga0244776_10057003

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10057003
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3027
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Bacteriovoracaceae → Bacteriovorax → unclassified Bacteriovorax → Bacteriovorax sp. MedPE-SWde (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042906	Metagenome / Metatranscriptome	157	Y
F080057	Metagenome / Metatranscriptome	115	N
F088304	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_100570032	F042906	AGGAG	MPIIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASEVHQLESAKEFIKEITDKGILVDEMLIGPTDFLASENFYEVMPHLVDIVNENSPILAFVSTLIDGDIPRFCQFLKDNINLDTEIEIGIATNPHKFMSLDYMSNIQSKLKYLDENIDHEITYTFVVNIKDYGIDYHELHEHAVKCFDTILDFIPSVSRSHKANIILETLDKFNEYFNVLTRDSTMNNIMVDHSHAGMNYTVLNYKRGDWYLSPFMYENMAIYHDMFKVETFEDAVTITESQIDRAKNTECESCPMFFSCYNRKIILLRDYLGVDRCIAPKENMINNIHNYNAPAQEMYDWDGYSVDADKKGYRKKFLVTEDGDERLDRIKDISYVK
Ga0244776_100570033	F080057	AGGA	MLNNEWQDIVINGKKLEEFSAISDMGTYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSINLFHALAYELKDRTDIVLDDIVIGPTDFYGAENLEEIINNPRLADAILMMPEDNRNVQHNCSILGSLSEEDIDGKIKAIENSPLGKAVEAWDVQIALDLNRLMTDIIYMEALDRRIETFKNSSLNFEISMATNIVQGVEEILFAAIDFVRTKYETVIEVLPSVVRSFNHSAKHGDKLFEWNDMLTRLSVDQNRFKNKFHFLQGDVSHKAFHYSVVSLYQGDMYISPFIYENAQIHIDDFKVPVNGSLVDSILNKKNEVVNRQIENSSDKECGSCKYLNICANRMVPMIMDTVFDGRKECILNKDVISLYDDEVYHGNSY
Ga0244776_100570034	F088304	GAGG	MGIVTNNKAAAQADKDFDLSFNEGHEIKVQFNCEILSGCEFRCPGCFVNKKGTNIGSFERLHNAIDLFNTNGYRVSTINIGPTDLFGNNNILDLLKDEVFRECLSKVTTIQFVTTLNHISYEVIELLNSIPKAPGFMYDCNIALVPPVNWTAIEDKL