Scaffold Ga0244776_10053436

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10053436
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3144
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043361	Metagenome / Metatranscriptome	156	Y
F070888	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_100534364	F043361	AGGA	MATDLSEELAALVPRLFPTGLMRDADEGGGVRLSFITNNRLYQLEVQTEDSPTEFTLSAGTENPYMEATPAVMQAFIAEMIKRFPSANYCPRGPHGADFSASALGRKLPGLPLEAEFLRCKQVVDQCLDGQSRVAFDL
Ga0244776_100534365	F070888	GGA	MHHDFFYQDYEFQDYPAEQPLPDHRNREQHVQEYGWKALQVHPITQTIRLFEIAYHKYPREMNYLDPLRRLMNVAYGAHPLFGAQETLRLTGYIRISHHAENEFEAMTLASDSFARYGFTLKEAALCAKHAADCAKLAGKPKKVVAAWRARSKQLRAHLKKIS