Scaffold Ga0244776_10029932

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10029932
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4389
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015867	Metagenome / Metatranscriptome	251	N
F018713	Metagenome	233	N
F043930	Metagenome	155	N
F047570	Metagenome / Metatranscriptome	149	N
F088880	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1002993210	F018713	N/A	MTPDPNLWAEIPQEVKDAAILLGNYFKKKGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVSEGSDMETIICGLENSKKQFLNEGGDGIDYTKSF
Ga0244776_1002993211	F047570	N/A	MTDENKLKIVTLSHNIKALCYILDKKTFSEHCVTSGNFIEIDYLFDLAKKLKEMNKEE
Ga0244776_100299324	F088880	N/A	MRIHTENTAFIAMFVLVVIGTIAWGLYIRSTNNTIKVIDNCQYIRQYNGHGWNLTHKGNCTNIIHYKK
Ga0244776_100299327	F043930	N/A	MNKLEKARWRNILQKAAKANRLFKKGYIVFDHHGSRFEGFKFENGLLYEGSENYRSVWISKDKLWSEHLHTPIKEFNAKRFDKWTAVHPKHIKKI
Ga0244776_100299329	F015867	GAG	MKYKVTYYDYDSDEYLTKDLYWMASYRGSFDFVPVSDGPKENWKGFSISGSGVNLFYNDKGLNITVDGFQEMKSGGYGKTTTVIQSVN