Scaffold Ga0244776_10016591

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10016591
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6177
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y
F008814	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1001659110	F002060	N/A	MEINYISVVMAISAALVSGMGTALVAGFRENKKEKVRRVERDQDLLKMDLKDLKIELYKIEKELNEWKDKYYNAIQELIGIKAELEATMIELAHFEHHSDELDR
Ga0244776_1001659115	F008814	N/A	LAEDKTTVLEGIIQDIGRELYQKWYNALAIEDRTEDTSKVMLANANETAFWAIQEFMNRFNAAAEALKDK
Ga0244776_100165918	F000473	AGG	MEFINKDKDHFKYGINQWTGEPNKPVFYNKEMALAVRGIKKPVVNLQMDIVKYPEFLCLRLYEDNFIQYTGNNKEMVIDYLQKVKKLIESYGVRCELEGVPSQKVIRQGL