Scaffold Ga0244776_10002856

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10002856
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17164
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (60.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033434	Metagenome / Metatranscriptome	177	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1000285621	F033434	N/A	MLFKKQEIHSIDFTGTEGMNVEAWETWAEQMQLSHLSTWLLPQLVAWYGSWTLVLDDKSNYDCLATVKLNCSDPKSRAFYMLSRIKRSLLVAQQTKTPDYASLTPLILMGLKRMQGINYETWRQSSGLQYMLEPRLLDAIVLPSTDLETCGGLGSNRLLEIQKQGLTTKSGKTAGSIKSARSTWSLSGLQDTEIAHLPKLTQTILTQCWLAHPELRTPYMILDLQDWDRMPQPLVTNDIFKAVQTQQPTKTKELADVLPWDL
Ga0244776_1000285623	F039640	N/A	MNIEDLLKQSQKTAGEIDILHYTNLILLEACKLIKDTPTTSAFTTFDQAVAETQRADCFRAVYDQIVRNIEDVATAK
Ga0244776_1000285632	F039639	AGGAG	MNIDREFVKWFYEDAYPEQGSNRRQVYSTTQNSQNINIIDYWMREAFKAGAEAATHDYEVNALEQFEAFNINRNYPL