Scaffold Ga0244776_10002541

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10002541
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18349
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019447	Metagenome	229	N
F036695	Metagenome	169	N
F082686	Metagenome	113	N
F086682	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1000254114	F036695	N/A	MTYTDKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVNNKGQRGDGERMLYENNFDAYKLSETIIKKILRPLGLLKTISWGVLIVIDASGNRLIEHSMIKN
Ga0244776_1000254124	F082686	N/A	MGRLILTEDDKKDIKLQYQGSIDKKFYDFLKANVEVEGRNVEYFEKPFVLLYVDGKSRLLNNSKKYLVNVLINAYGDDFPNLNDASKRLTAKKFIDELKKQYFYED
Ga0244776_1000254126	F086682	N/A	MNKKSPYSNAYKIGLSVFIVLVVLISTIVISVIKSCEPKVSRFFNPKTNMTDTVFYDGPDTIYLPNPQKIIVHDTFRIVCHKKHCEEVKVIKDTTTK
Ga0244776_1000254131	F019447	N/A	MKTIPKEKLVQGLKILYKLWNREHDSDSDWPSKHYIEWENGVTYDFYNKYEKQLGLGNEPDDYYYWMNALEENEDNLESDTLTVDNVIIPKYYTFDVETYEDRVEQVRVMFEGQVEGYFKEDQLYKSFYELGQGEVFDFYDFDETDRDYGDGEGNGIELRKITMVSDVIPESNKKRKVMSIKESNLDSFINSLNESETKFLIEKLQKKLL