Scaffold Ga0244776_10000125

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10000125
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90868
• Total Scaffold Genes: 155
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (17.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058139	Metagenome / Metatranscriptome	135	N
F060894	Metagenome / Metatranscriptome	132	Y
F074869	Metagenome / Metatranscriptome	119	Y
F076088	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1000012547	F058139	N/A	MAIYNNDKDPNVIQWEQEQMEIQINEPRRKFEQWWEQNKERILAEDQLNHDMQFKSKFIQNGDY
Ga0244776_1000012561	F074869	N/A	MTMELQIRCLEIENWTRSLTMRGMDREEIVYKIDEMYEPETLDEMEVIAEAIAYARLGVL
Ga0244776_1000012562	F060894	N/A	MAFQTRDQFQDKASKKLDRVLNKKKKEIPLSEQSWSDLNQRGATLAEQYEWIRLDKRKRERESNNKA
Ga0244776_1000012571	F076088	N/A	MKKPKQNKLPEFVIFSEDGFFTGLANGGQPQWSMEIKNGKPFNNECKLGALQYVVGAKELLIEYIN