Scaffold Ga0244776_10000082

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10000082
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111348
• Total Scaffold Genes: 154
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (8.44%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F004696	Metagenome	427	Y
F006935	Metagenome	361	Y
F008359	Metagenome / Metatranscriptome	334	Y
F012978	Metagenome / Metatranscriptome	275	Y
F013759	Metagenome / Metatranscriptome	268	Y
F014137	Metagenome / Metatranscriptome	265	Y
F016809	Metagenome / Metatranscriptome	244	Y
F021108	Metagenome	220	Y
F022884	Metagenome / Metatranscriptome	212	Y
F031867	Metagenome	181	N
F049619	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1000008211	F016809	N/A	MSKINNEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKSVQSHSIFPDEVQYDDEYYKSSYLPTPDEEAENYKQTKQNGNT
Ga0244776_1000008214	F012978	N/A	MEFNKTDKDLKQMSDDELFEYLDAKALYLKQHTSPLSSYKTKKFASIGAAISNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE
Ga0244776_1000008226	F006935	N/A	MDKRYAKQIIQWAEEAKETLTIRKEIIIDENVTDEKLGNIIRMMYKAKVETQNETILKTKENTRL
Ga0244776_1000008233	F022884	N/A	MLTINNLDKIVRYPIGYTFRVKSMVCGHTTYHISLIDGKGGCRDLKLNRIKNKRGKYTISHGNYSLYLKFSDIHNLDFFCKQITRLIC
Ga0244776_1000008234	F014137	N/A	MLTIKNVQQIIGQEYNEVFNIIGVKEYKQCYEFTLGYDATIKPAVETILLHRKQTDNGMYIMEYNSKTLWLSKSEFDTIDKIIICMQTI
Ga0244776_1000008236	F049619	N/A	MLTIKNLNKLNNIELGKKNFYVARIEEQFSIDNISLTASQHQYKFELSNMKYAITVTLDRGPKQFVVSHYKLTSSTGKVLYITGKEISNMDIFIDKLRFVALG
Ga0244776_1000008241	F031867	AGGA	MIVKNEIELSADSLLNTKPTRVETHKEQNYLVYEFDNTELF
Ga0244776_1000008247	F013759	N/A	VEKIKQDNMKIELGLSVLSKRETLLGVQLTTHNGVSVKDGELCSERVVEFSIGIIFAIFTIGFVSIGNKIETPDNVMKAIEAFESEMDKNK
Ga0244776_1000008252	F003691	N/A	MYWVERMTPHIVKNYNMNSRMTNEFTETAFNTSRNERPIYRNFAASKLSNSIKPQSIVEFTDFMGRKHKVAVRNNTELKKQMKFFGMLKKESATIKQIISQYPIKLGKVEKRFLAECKRELKSVLKLNNKQLEIVLG
Ga0244776_1000008253	F008359	N/A	VFKVISKVKMNNMSKSKVNVKSNYDIKKVKRVMRMKNEGFEPTSFEVFKVSGPNKFKKYFVSRKDAKSFIDNYTDTKMTLGIVKNIMNEIKVK
Ga0244776_1000008260	F004696	N/A	MDYAIKKLKQDEIVLMKKIKSLQDGKPKWAASKQLDEIRSAIQLLERYNDISEQDIENEDEYLKQIFEVHPAKAKA
Ga0244776_100000829	F021108	N/A	MAQTVTTQMNEFRTLEDGRIVLDGLVWSQHAEKAIEVKDEDNGFKVLNIKLNGVAYYPVGYDKRKKK