Scaffold Ga0179591_1216899

Overview

Basic Information

• Taxon OID: 3300024347
• Scaffold ID: Ga0179591_1216899
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2512
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005638	Metagenome / Metatranscriptome	394	Y
F018221	Metagenome / Metatranscriptome	236	Y
F047513	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179591_12168992	F047513	GGAGG	LNYKTQPPWEFLLSASRNSLQSYELSRLSHAANLRKEITQLLDSWLEENTAAMLARWLMEQRERPATREQGDPSIAATSNGDRSPAPDNRSKAAQVVSDNFFADQTGSPPDFRSRP
Ga0179591_12168994	F018221	AGGAGG	MGRNRGTSKARTVVPTQREVLRDVMLAAGKYGAWMTLRELGRLTRYGETSISAQLRHLRKANCGGYVLEKRVRQADVIGAEEHFVVWEYRLTPRRVTRLRAATSKTRAARR
Ga0179591_12168995	F005638	AGGGGG	MGVKAELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKYLWRPDFRPRLGEWVADFALAGQAALAGAECASRMVM