Scaffold Ga0179591_1177479

Overview

Basic Information

• Taxon OID: 3300024347
• Scaffold ID: Ga0179591_1177479
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2191
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F011773	Metagenome / Metatranscriptome	287	Y
F017513	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179591_11774791	F011773	N/A	SKSDVRISLFPPWFVSMEVFKQFQRLLRSLYHQSPNTIVVRVDSVLKKPPAISLKKGDNVTVELKDPSAFQQCTQATFYTEGWIFGSGIAVKELGHEFSPGGGTPASGAGAAESALVQAQKQISDQDIQNRVASSESVVIGRVTDVRRWTIPKSAASRYHTSEHSADWHEAILQIDSVLKGTKPKKGKMVVRFPLSREVAWVNSPKFETLQRGIFFLKTDQVSGDPAASLGGYQVDVYTCLRPGDWLPVSDEARVRSLLKN
Ga0179591_11774792	F017513	N/A	MGEEYVLNVGATRFHVRNGYIRRLRDAEDPKCGYEETCFYPVHNGMPKAEEIATALLQLANNPALFDKWALKNGQAVKADGQLFSRAE
Ga0179591_11774794	F000217	AGGAGG	MNARILTFSSDGDKTLLEYDPATADMEEVNEVIAEYEAQTGAQPFDMATGERIEKVTRDQNEVLMVHPIAGG