Scaffold Ga0244775_10541797

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10541797
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 948
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F004191	Metagenome / Metatranscriptome	449	Y
F065117	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_105417972	F004191	AGGAG	MLKFKEIMATLFAVLGIILIVGTVGAVETDQFILAFTLFVMGTSTMFLSIICQEKQ
Ga0244775_105417973	F003514	AGGAG	MVTPQEYNKLREQELILKAAKSSGAVKSEMIHGSLFVTFAPGFVDIFSQDLKDVLEKLLDNTIVKMYNTTNNEYAYDFI
Ga0244775_105417974	F065117	AGGAG	MKKKKTKKKVKLTVDGYYTDNNGFWTIYKTESGMTVMKKEKKNNDN