Scaffold Ga0244775_10366107

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10366107
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1188
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013755	Metagenome / Metatranscriptome	268	Y
F029732	Metagenome / Metatranscriptome	187	Y
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_103661071	F013755	N/A	DTPITDSTPHNVADLAMLCRRFEQFAAGRQSYIDQLEIENDAMRADLLLWREAKP
Ga0244775_103661074	F059002	N/A	MNILNKIKSEISRLFGVHKTVETKEAPRTLKPKRSPKRGRGRPKGWKIPRAIVDAVLQADKSVSSKQLAAKYRVSYYWVWSVRAKKLRLKR
Ga0244775_103661075	F029732	AGG	MRYLSKTKPTVVVEFVSEAQLRIGETKRLCVIYQRGEIFYVRPKAEFFDKFVLDEPQIQT