Scaffold Ga0244775_10314527

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10314527
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1297
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009503	Metagenome / Metatranscriptome	317	Y
F014089	Metagenome / Metatranscriptome	266	Y
F024931	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_103145271	F014089	N/A	MTAKLLQNGEVIAEYKVEQCDGCAKVLKLDPFGYKVGQAGEKLAWLCGDCR
Ga0244775_103145272	F024931	N/A	MQLTREEEIICMLAAVKLCVDNNKFMDNPQRHQKEMATFEYLVESAEAIGSEWVVAKYFDLPFNPYENKFKTKADVGNAIEVRWTKYVTGQLIIHEYDRPNDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI
Ga0244775_103145273	F009503	AGGA	MDKVQFECRKCKKVTTQLIHKITDNLPDGVEVIQCTKCEVMGVAQIGNSNANL