Scaffold Ga0244775_10304684

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10304684
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1321
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038851	Metagenome / Metatranscriptome	165	N
F088932	Metagenome / Metatranscriptome	109	Y
F103238	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_103046841	F103238	N/A	MTVSKIKEIVNEVLTINLVDWLSKSQIQLIELEIDVAEIDEKSVLEFIFNKSVTFKCSLI
Ga0244775_103046844	F038851	GAGG	MVVINGVSLDQNTYNMKIPKITKPWSKEMYDYNDYIANFMKMEIETQINNNKDNWDTLNELIDLCGEIKYGDGYTIEDLHKGCLKALENVENYWLNNEWSYFVSKGLVNDIDLKFVGYGK
Ga0244775_103046845	F088932	N/A	MANSWYYREMGSRNKKTGKLSYYQVRVTDYKIDDCECPARS