Scaffold Ga0244775_10279730

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10279730
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1386
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031871	Metagenome / Metatranscriptome	181	Y
F045555	Metagenome / Metatranscriptome	152	Y
F053806	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_102797302	F031871	AGGAG	MKVDHTLYIYKADRRYKSGERLVSTTVWQHRDAAEMAREVRELQHDTWPKSQGYRCEFVATMKTVRNLMSGAEIQIPHDTPRSCDPSSELYWSM
Ga0244775_102797304	F045555	AGGA	MTSVFIVRAEDRGAPESTIYGVYPTAKLAEARMAVLEDSRQDFCHDFVWYDEVKVGPNGADCEFANR
Ga0244775_102797306	F053806	GGA	MTRYYDELAVYERNGFDIIVDKSYEDLDPKDCFDDDCFNIKEMYSDIECGNLDWFMLRVRVMVEGIELSSEFLGGCLY