Scaffold Ga0244775_10277666

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10277666
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1392
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015209	Metagenome	256	N
F056602	Metagenome	137	N
F065778	Metagenome	127	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_102776661	F065778	N/A	MNENTTVIVDHGCALFGTYQASFFCKGEITVENIVAEISKRLGLECATTGYNEEFHSITVIVPRG
Ga0244775_102776662	F074878	N/A	MAYTIAMNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGAEWLLQDGDKFYSQKGLVK
Ga0244775_102776664	F056602	GGAGG	MSNWTKGFIVVAIASQVFLFVILFGCKVGEGFYISGVDLVGMILASVCTLVYIPAILVSHDSEKIRKKLNEQLQA
Ga0244775_102776665	F015209	N/A	MNSYRHKALSLWSNLLDEERWHKFENTNCKPSCKGWNGWAPYCECFENSCTFVPKGEIEDMELVIVAKPIDDVLRDIQIIP