Scaffold Ga0244775_10251885

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10251885
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1471
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F084218	Metagenome	112	N
F103233	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_102518852	F001754	N/A	MTQYNNFAASKMSNNPKFEVIVSYTDFLGKQHNIVCKSRPKLKEANEFLKMFKTESVAINKILSEYPVVLGKFPKKYHSEIKKELAAAGFSTVSNFLIK
Ga0244775_102518853	F003291	N/A	MNQTTEKLVSIFNQDELAALMTAMAGYINTKNKQKRATGIETVVFNKVVDALLVSNYMNAVEVKPKAGRMGVAEYKMSEAQYEAMYESDVRAHS
Ga0244775_102518854	F103233	N/A	MSKGQTDSELYEALYDMGYDFGEYDTEDFDGDGFAETAVNLGYRWDAEANEWYNN
Ga0244775_102518855	F084218	N/A	MSISKQIKSDLIAMVQTHDWSYMMSDSNSVWEVGLRHEAGIKAKIHALIGIHREDGIGLCDEIKDIAGSDYTDYNEDGFGLKYRIIHSWFKPYIGE