Scaffold Ga0244775_10236982

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10236982
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1523
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F023347	Metagenome / Metatranscriptome	210	Y
F050377	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_102369821	F023347	N/A	HGELKNLMLIAEQQLASAIETEEESEEAMDSMERTRCEGALDTLVDIYNLTYQLSFAIGVRSENLKDGH
Ga0244775_102369822	F001019	AGGA	MSTYEPSLEIVEMEYSCSPGGIDTFEVYDKTDIPLSMPIYETESLTEAVLFCYNLGKDFTVKTLAEWNERELAYEASR
Ga0244775_102369824	F000441	AGGAGG	MKMSDKYLNDQLSTAQKLLWGGSETENIEAHNIIAKLIKDKIEQVEL
Ga0244775_102369826	F050377	AGGA	MSTPTTTREYLKTQGISVGKRGRFSAAALGAISKAAKEGVVFTDTKNVK