Scaffold Ga0244775_10210758

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10210758
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1628
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047385	Metagenome / Metatranscriptome	150	Y
F047629	Metagenome	149	Y
F058064	Metagenome / Metatranscriptome	135	Y
F064619	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_102107582	F047629	N/A	MTKTCPDCGLSLQGRDNESETCSDCLLGTTDEQYKEKPMNNKETILDPIEMTEELMFHIFNAEFGGELDSGHRFFELYLQLQLYKEKMLKDEEDTYVSVVNDETNTAS
Ga0244775_102107584	F064619	N/A	MSVTTILKSLDGKRDIRFCHYLESDRSHALPKLMWKCVSHPEFQGEAMSKEHLSECFKDTLKLLHVKLNQQ
Ga0244775_102107585	F047385	N/A	MKIEQPSDNSLYVTIGDYVYYFDDSIEGENIVSRWHLDDDESDIREDIQLDGELTKSIIS
Ga0244775_102107586	F058064	GAG	MKDKHNMKDKQLQSLINYAKAQTPKEDLKPFNPDDYVWQEKGTKWKQLLVILLSPLSCILVWVWLAFLSSK