Scaffold Ga0244775_10151260

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10151260
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1959
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F101159	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101512602	F054874	GGAG	MPNENKGGTFAPADMDLLKRALRHYKDMLVSTEESERNASPELMKVANLLHRIGRIA
Ga0244775_101512604	F047683	AGGA	MNLTIEQIESTYTVPADATRQNYYPVRAYWIPIELREQVLAAYRETNTRIRLRYRGPRSVSIGREMTRNDKTTYLRSRHRAMQDCLIADATHFTVYDYTSR
Ga0244775_101512605	F101159	AGGA	MLTLRDINTATGSKDACIYSDLYKDVYGCRPYNPTFESVEAFDADFEELSRLLDKEIESEAEYQQIYFDKFVARVQETMEIVQGATRERAIEIIAEAEGIRAAEFDFYGLEILEHELNLKFGSISKWLSE