Scaffold Ga0244775_10150544

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10150544
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1964
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037735	Metagenome	167	N
F063702	Metagenome	129	Y
F090083	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101505442	F037735	N/A	MTVYTDLFNESIDDLATTLATITGLRVVFDPEKINPPCVFIDAPSFDCFNYNIVTMNFSVKVVTLGPGNLDGLRNVLDMCAKVLAKNVAVKSGRPGYIPIGGQTFAAYDLSIDVQAQAG
Ga0244775_101505443	F063702	AGCAGG	MKYTIISERIGTVGAEFVPGAGTNIEALLAHGFIESDEPASASPAPKSAKTKAQPKKD
Ga0244775_101505446	F090083	AGCAG	MAATTTSITVEGVKEAVKHLEKCEPGFRKAYVANMKEVARPMTDAMKNSYTDSSFPSGTQRNWAQKGTPKFPLTAAAAKRGVSLRVNNKRGKSAAISVMQKNPAAAIFDIAGRSNTNPLGMAFTTKFGRTASRVIWPAFEANITEIIGGIQGCR