Scaffold Ga0244775_10146558

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10146558
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1993
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001460	Metagenome / Metatranscriptome	690	Y
F023344	Metagenome / Metatranscriptome	210	Y
F053291	Metagenome / Metatranscriptome	141	N
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101465581	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQHLFEQWNDKNLDEGSDYAEYMFMQFAPDTLKQSYNEYYGYIEGDEYCL
Ga0244775_101465582	F053291	GAG	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLQTMIKYMEAIEC
Ga0244775_101465583	F001460	GGAGG	MLGYTKEDLDRMTNAVHDAKLFYLRTPSNLMDKAPLRKDLEDTVSFLQGLWAEGYFD
Ga0244775_101465584	F084239	GGAGG	LTRSSRFMEYLKIHLISLEQDLEQIDYVNAHHFYRVKQAEIENTRHILSVATDIMNSTNERV
Ga0244775_101465585	F000263	GGTGG	MNSEDIGLPPHLQRMVNAGVSGLDILHGELKNLMLISEQDLADALEQETLSEEAMDSMVRTECEGRLDTLVELYQLTYQLSFAIGARDEA