Scaffold Ga0244775_10140442

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10140442
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2041
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F005817	Metagenome / Metatranscriptome	389	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101404423	F003647	AGGCGG	MVMCEWTLADIKNRASNKAFAKVTILGLDIEEQKRNLKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ
Ga0244775_101404424	F005817	N/A	MRSNLLSRLKPEFKQGLENNKPIYPSMTKDIEFLLTQMFYYDDLTVRQVLNIFVFSDMQYLDRKSFNWRYGEDLFELEGGVA