Scaffold Ga0244775_10127078

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10127078
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2159
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009521	Metagenome / Metatranscriptome	316	Y
F021404	Metagenome	219	Y
F022084	Metagenome	216	Y
F080492	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101270781	F021404	GAGG	MTYKINDKIDYFFKGDEDNEPCNDVMIVKALKDLDNDEVFKLKPTANNNNVLVKGDYDKSTGKYWATKWHDMNNETLKDGNTLVFTGFIF
Ga0244775_101270782	F022084	GAGG	MTHQKYLKELFKLIEGKGYTIECECEGEEITKDEALTQVDETAIYVIDKDGHSLGWIYFLFWNDWDESISDYTLDLDKILNLDGFIKSFTYNY
Ga0244775_101270783	F080492	AGGAG	MSKVHHTQYKKNYKNYILDCLETEDELIGKNLSDDEKINYLFDRFGNEYGFQIERIGEYRAMTEWLSGLAINIPYTYSDIIELAIDMGSIDNNPSEALKDRVIENYFSFMANVILSFKSKEVA
Ga0244775_101270785	F009521	AGG	MKYKIIINNGTLKGFLAFRGSCLATMQDKYKRLEQQGHKLKLIRGE