Scaffold Ga0244775_10116919

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10116919
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2260
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F032279	Metagenome	180	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101169193	F055728	GGCGG	MRRSYDPSYGSREQLRNCHEHGMKVARERDALKTENAKLQEQITELKAMIAYMTEGE
Ga0244775_101169194	F014620	N/A	MFAPSIGLGGTYERPAINRDIVIIAREAKQTSVDAALKAKPKTGKKRARVHAYLMGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNEAIVWRCV
Ga0244775_101169195	F013413	GAG	MTENEYDETFDMQMEREHQLNLDRMRQFKLIGEQISKMPDASPKVLEIEVRYLMGIIGELETRIKDLESEARRLEMLLTRAN
Ga0244775_101169196	F032279	GAGG	MHFIIKLTIAFALSAIGVGVSQIPQPLPDMSTTTPTDKPYEALGGFGQAMADIYRYVPPVTTTTPPAPVYKHGDCSWLPALALQAGWQPEQIPQLTKYALRESGCCPNRAGGDTVDKDCNITGVAEWSHRSDSGLLQINGVHWKPDHPQYDGLICKQMRICTQKPLLDALTNLRAARLIYIRVGWSAWGN