Scaffold Ga0244775_10115476

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10115476
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2277
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101154765	F105192	N/A	MNIPLTEILITLFAAAISGLLTAQIGARRSKKEKIERKAEKAHDHLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTMLKLSHLEIHSDEH
Ga0244775_101154766	F072349	AGGAGG	MDKVLCYSCNKSKNELSAKKSTLLPINLLLCKSCTENKLEPRWTVILAGRQYGSDHVKEHIAKKKYVGPDITASELLI
Ga0244775_101154767	F011394	AGGA	MFIDKNKNHFKFGINEWTGEPNKPTFYTKEMALKIRELKKPTSTLEMDIVKYPDFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG