Scaffold Ga0244775_10092791

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10092791
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2571
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017479	Metagenome / Metatranscriptome	240	Y
F028169	Metagenome / Metatranscriptome	192	Y
F063695	Metagenome	129	N
F085703	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100927911	F028169	N/A	LSKSKADKRIAYIIFDGQICSHILNWKWRKYTGANKHVKHCHVSFKKEADNDGAFFQIPMLGGE
Ga0244775_100927912	F017479	AGGCGG	MNELKTAAGSWARAFLVAVISMAAAGVSDPKALIAAGVASILPPVLRYLNANDTALGIKK
Ga0244775_100927915	F063695	AGG	MNITAKDFDALTDTAMGWKGNGWEIQSDRFTDMVTFDWAVCYWVDSVASLILAKTFLQDNGHSYQQSYDENMESYILLTNYDSYNMAVSA
Ga0244775_100927916	F085703	GGCGG	MAAIEIYGAPVVEKYYCLYCSFDMTATMVCIDCNEYKSAVTLQEFIEFNGHYPKLRAVK