Scaffold Ga0244775_10092178

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10092178
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2580
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F005503	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100921782	F005503	GGAG	VSNEIGLFVIMAIACILWALMSYSIGYKEGHKDGYQRGKAVKRHASSQAVR
Ga0244775_100921783	F001897	AGGCGG	MAFMDNYEGNKERTDRWLATFPQGRLEAHVVEFNAEKGYVLVQAKAYRNQLETDPAGIDYAHGYLAAYPDKMKRWMVEDTCTSALMRVMALVMGGTEKATKEVMAIVKTETPAADYDYWTTKHGDVPSYQTREEAEEADETGWAVNGVPMCAHGSMRWNQSKPDAPKAWAGYFCSEKAKENQCKPRWYVLTSDGTFKPQV
Ga0244775_100921784	F000403	N/A	VDGVQMSDYIEIIHPQSMTAKLLCNGVLVEEYKIEQCDKCSQLRRFDKFGYQKGYDRTENIIWFCGGCR
Ga0244775_100921785	F000903	GGAGG	MIDRIEEVQCMIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYDYEPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNAPKMHIVGWMPVAVAKRPRYKNTSQNNWSVPQVNLQPIETLVRSNYAHPAI