Scaffold Ga0244775_10089055

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10089055
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2631
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F070109	Metagenome / Metatranscriptome	123	Y
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100890552	F084221	N/A	MMSHQQQVAQGVTGTVSSILLSVPAWMVDVEFALKIFCLMLSAAASIYTIYKMRKKR
Ga0244775_100890553	F047677	N/A	MKWLKSVFSNEGDASSKRVASILALIVCINLSYIGTFTDYKCPEYMFDGLLILAGGGLGLTVIESIFDKKKSNDTRSQDSN
Ga0244775_100890554	F077297	N/A	MTQEAKTQIKAAAVMVVALSICITIQCLYIALKDSKKAIQGYERRADRATHVIDSLEATNVQRMLEIDELNMQIEHNTKRYEANISAIDSLDRHGLKRAMHNLLSSLAGERYPGESND
Ga0244775_100890555	F070109	GAG	VSLTTEQVRALLKLKAERDYLKAQVGLLSKSDSIASFVIKDQQKTIDAYSIANEQKAQQLVKVQQELYKEDARKESWRSAALIGIPISFVGGIIFNLLF