Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10076790 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2859 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003965 | Metagenome / Metatranscriptome | 459 | Y |
F017484 | Metagenome / Metatranscriptome | 240 | Y |
F048982 | Metagenome / Metatranscriptome | 147 | Y |
F080046 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0244775_1007679010 | F017484 | GAG | MSNIEIFRMDTNGAGWVDIESATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCVNHKNVKGGIYFD |
Ga0244775_100767905 | F048982 | AGGAG | MSIELQDVLNVCRQIRGNDRDSGAHYLLGYLWASLSDKEKKRIATLFTNDLLEQEKNK |
Ga0244775_100767907 | F080046 | GGA | MSLSLANKIAKDKFFQPPSKYINHKVVEIVSINEDSGIATVILEKYTISGNANVYKNNNVFTVELPYSEFQNLNGWSK |
Ga0244775_100767908 | F003965 | AGGA | MTSLNVMCKTHIPNKSAISDVNDEQFTFCEECENNIERWYNDSDPERLPMWTEWKVSK |
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