NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10076790

Scaffold Ga0244775_10076790


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10076790 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2859
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003965Metagenome / Metatranscriptome459Y
F017484Metagenome / Metatranscriptome240Y
F048982Metagenome / Metatranscriptome147Y
F080046Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1007679010F017484GAGMSNIEIFRMDTNGAGWVDIESATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCVNHKNVKGGIYFD
Ga0244775_100767905F048982AGGAGMSIELQDVLNVCRQIRGNDRDSGAHYLLGYLWASLSDKEKKRIATLFTNDLLEQEKNK
Ga0244775_100767907F080046GGAMSLSLANKIAKDKFFQPPSKYINHKVVEIVSINEDSGIATVILEKYTISGNANVYKNNNVFTVELPYSEFQNLNGWSK
Ga0244775_100767908F003965AGGAMTSLNVMCKTHIPNKSAISDVNDEQFTFCEECENNIERWYNDSDPERLPMWTEWKVSK

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