Scaffold Ga0244775_10076790

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10076790
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2859
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F017484	Metagenome / Metatranscriptome	240	Y
F048982	Metagenome / Metatranscriptome	147	Y
F080046	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1007679010	F017484	GAG	MSNIEIFRMDTNGAGWVDIESATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCVNHKNVKGGIYFD
Ga0244775_100767905	F048982	AGGAG	MSIELQDVLNVCRQIRGNDRDSGAHYLLGYLWASLSDKEKKRIATLFTNDLLEQEKNK
Ga0244775_100767907	F080046	GGA	MSLSLANKIAKDKFFQPPSKYINHKVVEIVSINEDSGIATVILEKYTISGNANVYKNNNVFTVELPYSEFQNLNGWSK
Ga0244775_100767908	F003965	AGGA	MTSLNVMCKTHIPNKSAISDVNDEQFTFCEECENNIERWYNDSDPERLPMWTEWKVSK