Scaffold Ga0244775_10074951

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10074951
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2897
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051923	Metagenome / Metatranscriptome	143	N
F092056	Metagenome / Metatranscriptome	107	Y
F093292	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100749511	F093292	AGGA	MPRRKIPAANTESPEVASNTPANIYYEYIIPRATSVLLTRYEWARGLGLSDKNVKKAQTARHREVAKGFARTEEA
Ga0244775_100749514	F092056	GGAG	MNEQRILDGLANAPDAFDYIYECISGSHGEELRAYAADLYHDVAIDTGLHPDDDFEGIINIILDDLGA
Ga0244775_100749515	F051923	AGGA	MFEVRKTLAPYGFQVIDTTTDTVLETFKRKYQANAHAFYLGQTTMKSVRNLMTGKEIQIPVHTPRACDPSSELYWSM