Scaffold Ga0244775_10073731

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10073731
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2923
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F006698	Metagenome / Metatranscriptome	366	Y
F045555	Metagenome / Metatranscriptome	152	Y
F105150	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100737314	F006698	GGA	MTRYYDELAVYERNGFDIIVDKSYEDLDPKDCFDDSCFDLKEMYSDIECGNLDWFMLRVRVMVEGIELSSEFLGGCLYKDAREVLTDGTAEDLIDMALTEAKKDVYRLYKKFQDISWELDAEGVAR
Ga0244775_100737316	F045555	AGGA	MTSVFIVRAEDRGAPESMIYGVYPTAKLALARIAVLEGEDFGHEFAWYDEVKVGPEGADCEFANR
Ga0244775_100737318	F105150	GGA	MYRYVCQMFYKDRLYSGHYWKDYSLARACKEMDKLCEHRPGMRFELTDYKTGAIIKTVEHTIPKQERTYA
Ga0244775_100737319	F006112	AGGAG	MKTNYTMYIYKRDRRCKTGERLFSTTVWQDRTLEGMEREMRELARDLYPGTDWRFEFVPTMKTVTNLMSGAEIQIPHDTPRSCDPSSELYWTM