Scaffold Ga0244775_10060066

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10060066
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3286
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F011487	Metagenome / Metatranscriptome	290	Y
F073599	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100600661	F073599	AGAAGG	MSANLYSVESLLVGKMYRSNTLQGEIISAEKHPKAVWYDGAEAYLVEVRKPMGGYTYRTIAVKVGE
Ga0244775_100600662	F000447	GAG	MGYVEIFRIDNEGAGWIDLAQANEDELFNLELGLLNEGALFTTKEAN
Ga0244775_100600667	F011487	AGGAG	MANMYENEMFDNYYSTTCPQCQENAVDAYEEKCTSCLLEEMSAMYNEDIALEMSLGLDY
Ga0244775_100600669	F000684	AGGA	MTMNGYTYQIGDLFTTSKTGVTGRIAGFSPISNKVTRVSLVLSNGSRRLAMVKTSK