Scaffold Ga0244775_10051609

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10051609
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3578
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F047485	Metagenome	149	N
F056318	Metagenome	137	Y
F067425	Metagenome	125	Y
F097311	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1005160910	F056318	GGAG	MFKHITTYPWSVSRLTVWGYEGDYGVPMVADCYSKNIPVATMRANARLIAIAPQMYEIIQKMQSEDAKELVRYMEKETDHADQDN
Ga0244775_1005160911	F034068	AGGAG	MQIKTIKREKDIDYDRLYQAYGGLIDWITRNEVDGQETLGLLVKAAMSLAVTNNLPKDDVLEVVAVTYEMERSMRPRADEVH
Ga0244775_100516094	F067425	AGGAG	MKLSVDLLDNSVKSAVIDIGANNGYVEVFVSKGVVHLNVFNKEGDVVHDYAITTKNLRAKGGWTAPTFEPTLD
Ga0244775_100516095	F047485	AGGAGG	MQGLDDHYSALWVANERRPTVQTEKYTITVAVEGFVQIDVEATSRSKAVDQAMEIFNDSNINIVVTEKSIADVEKWT
Ga0244775_100516097	F097311	GAGG	MDDKERIIYLTAALKNLTLSADRYIDDGSWIEHLSLDVEFAKGVLKATKYSKEERGIRDAVGRSITGEKT