Scaffold Ga0244775_10048910

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10048910
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3688
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 10502 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F010618	Metagenome	301	N
F019834	Metagenome	227	N
F027179	Metagenome	195	Y
F060914	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100489103	F010618	GAGG	MTLRELILKLQELEKKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEIEQED
Ga0244775_100489105	F019834	GAGG	MKELKFTITGTIFVPDNAEYEYDFENQIYTFKINDKTYSLIAGLEADDKEIIVTDENLKSHDIRPVEYEDAYFED
Ga0244775_100489106	F027179	N/A	MRMPTLKIEKFIYMADGLFLYEKENSYVVMDQNDNVLKEAKTSKTCSSYISKTLQSRRAAERYAIEEINKSKV
Ga0244775_100489107	F060914	AGCAG	MQLKRLIKVRSDISSSIFPIELYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNAKIIQDINELKAQGIL
Ga0244775_100489108	F002398	GGA	MISLISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNVIEKSKFDFFAYLDTIGIEHSKVGSYYFFNKKNK