Scaffold Ga0244775_10048447

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10048447
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3709
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000888	Metagenome / Metatranscriptome	847	Y
F006986	Metagenome	360	Y
F020354	Metagenome	224	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100484471	F006986	N/A	VSAVLVTWHDAHSGSESWVNIKDLDLDPAIVQTVGFLLASSDGGKPDHLTIYQSRNEDAIDHVLHIPVKMVVSIKVLMDLEINSQDR
Ga0244775_100484472	F021759	AGAAGG	MDAGLAAVFAAAIAALGGIIVAIIQMKNFAEENRKDHAVVQKRLDNLIDMVAKQGAKLTSHLDWHVTKEPSKDLKVKQVATRKKK
Ga0244775_100484475	F020354	GAG	MFAKLRKEIFALGFTLGASAITIMTLSGSLQTWALIFTFMSLALHLAGVLTDKEGEENGTGNEH
Ga0244775_100484477	F000888	GAG	MNAQYFAQLDANNKVIHIAVVTADFMAANPHRYPGTWVETFFDTPGKTYAGIGFTYSEEDEDFTPPPPPIEP