Scaffold Ga0244775_10043074

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10043074
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3964
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F017133	Metagenome / Metatranscriptome	242	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1004307410	F003965	AGGTGG	MTTLEITKCLEHTPRKSAISEVSDTQYTFCESCENNIERWYNDTDPERLPMWTDWKVSK
Ga0244775_1004307411	F017133	GGA	MSMWTKFATVSDYPKGLMNLCPCGQVVLAPALYHAGQAHWDNPNKCKELFEGVTK
Ga0244775_100430747	F093845	GGGGG	MIKATLTTTMGTTREMSFNDKVHLLEFIELFSATLPLGTAVNIDAPLVGIHSGWVQGKAPKI