Scaffold Ga0244775_10042371

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10042371
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4002
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F045761	Metagenome	152	N
F068841	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100423711	F002909	N/A	QDAECSPNHFKRCDVAQIDLSKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPIWANLDANGTNASSKLRQSFIPGTITKSPTSINTILLAEDYWEFVEYGRKPTRGGHIEGTPYLWQSLKTWISQKGIKPAEGQTYDSLAKAIAKKIHRSGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI
Ga0244775_100423713	F068841	GGAGG	MIELAINGWILTVQGRICEEKYVYTIEAVDNWLIANHIEELQDYVNSTTSGFGDCCIKEFDGINSEAFFNAEPTKFKVLFMIGQRTNFF
Ga0244775_100423719	F045761	AGGA	MIQNYLIIGMAILFAIALVQLHRMSKEQEELIEKLQNKNRLIWDYETELLGIRSRIQEANDRAKTWELQANFLKELNDDKNQSTRGKSVNK