Scaffold Ga0244775_10040652

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10040652
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4096
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005563	Metagenome / Metatranscriptome	396	Y
F011151	Metagenome / Metatranscriptome	294	Y
F022413	Metagenome / Metatranscriptome	214	N
F043920	Metagenome / Metatranscriptome	155	N
F101135	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1004065210	F022413	AGGA	MLLAKPKLTNTLDAKEFETFAECQEYLETYTDTSMPLVDWIAIGKILVAETMTTPEFYPKKVKGQIVMAKFDIEEFA
Ga0244775_1004065211	F011151	GGAG	MTGFQSKRKMAEARFKVYCEWCHDWHYTDEVEMLNIEEDIQGRDVMHFECGQPPSWNEDISRYDGTSSLVYKE
Ga0244775_1004065215	F043920	GAGG	MRGSIIMLVGFLIVFGAVGGIEVNPDADLLTLMMVAIGGLIGMLIGVSVMREDAQ
Ga0244775_100406525	F101135	GAG	MKDIEIEQYCDGWTVKVDGKSFHWDHNDEDLGTEGIKDLLEYLGHSVTVEECY
Ga0244775_100406526	F005563	AGGAG	MIDYHEAVREMHKGNVVKYVGTVNGNVMTDNGASFCMCRGCIFLFDDGIKWNKLGYMVYDPDYRYELTGETVDPRAWKPERNRDRKEIKSRLGYSRIGLRNV