Scaffold Ga0244775_10039832

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10039832
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4144
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028005	Metagenome / Metatranscriptome	193	Y
F032446	Metagenome / Metatranscriptome	180	Y
F046077	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100398321	F028005	N/A	SLYKLTWYMRGGVSISELHGMPSNHIQYLNEIVSENFELSKQAGTPIL
Ga0244775_100398325	F032446	AGGAG	MSPKSIERTKWLATLMFVCAGTLISLNLPQSMYAFPLFASGHLIAIYVFSILKDKPLIVQNIFFLCIDLIGIYQWILAPIFFV
Ga0244775_100398327	F046077	AGGA	VFKIVEEAPPQWLLDDIAGGNDKLKENYTLENIKLQEMICFCMLMYNDDIVGFSGLQRKPLWPEPFGDWEDNTPRVNSRCYIAPKFRQYKIRGDRIRYPWKYLAPYQIEMADKMGYNKLFWSTELYKRPGKTMDLTIEYAKKYLPENWHYNRLEGYRDINGVEQEVCEILKS