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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10037997 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4250 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045747 | Metagenome / Metatranscriptome | 152 | N |
| F061855 | Metagenome | 131 | N |
| F068840 | Metagenome | 124 | N |
| F095478 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_100379971 | F045747 | N/A | IVADALVAAATASGSTWTFSATDPSSLINALYDAAREMAEDTNYFPTHLYCSPNVWEKLGKQLDGSNRPVFPYVNGTNNVGMNTLGSTSELSYAGINPLGLQLVVDNNFAAGTMIVAHTPTAGQNGSATSGFTYYEDFRGIMSLENPTLLGREMTAYGYVATFANIPVCLQSIIIA |
| Ga0244775_100379972 | F061855 | N/A | MATYTSATKQLIGNYACISTLEPTEIGLGESITVTGLGSTFNLTAKVLALPQYAFTGVDAETGAFLYNENVPRPNQIIYAATGADVEYVITYAGTITYTQVCTWVSATDVEDWLGIGTATAADATFLTLCAAAASAFCHLRRQECGYHDSLTVLPSTAVGLGTRAYGGFLYRQRGSVTDFASFDGMVSGGSNGLSPMIKQLLGVNRAQVA |
| Ga0244775_100379974 | F095478 | AGGA | MAYVIASPKLGTVGNVFEPVDGINVEALIAGGFIKSTIKTTKSDKPSKDTNEE |
| Ga0244775_100379976 | F068840 | GAG | MQLRLKATFNDGTVNEVVTTLATVVAWERKYKRKASEMASGIGVEDLAYLCYEATRASGTTVPGSLDQFIALLANIDVLETQDPKAVTAQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |