Scaffold Ga0244775_10037509

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10037509
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4279
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054683	Metagenome	139	N
F078411	Metagenome	116	N
F085381	Metagenome / Metatranscriptome	111	Y
F085391	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1003750911	F085391	N/A	MKFRSDNEAPVTAVETAIENILVNNGYDASDIQFRGTERYLRIGYWQRINEDIMSQLSGLVTAEIDMYDDDCGYLFSYEIKH
Ga0244775_100375094	F078411	N/A	MDYNKHTDEVLERLQAQQILEILATANKSITQALASIQELEHNSMMYLDMRPTQQIMDDINALHLHLHFLQSAKTFAKQEIQEIGFYLN
Ga0244775_100375096	F085381	N/A	MKTVLEQLMELKDKISAIEIAVCGETICGDGACGCGCDESPVEVVDEGPEFDSAGFSEVDRTEDSQYVVTEDDKYAGHVYLTRAEMIDFATRLTERVIESVKKAVTDMELNADDLVTLELNNWSNVIEVELDNNTLSNNVNSEIEDAVCLDVDSISDEIDDIFGDMYLERIS
Ga0244775_100375097	F054683	N/A	MNKTERRKALNKLVFEMVTGLGYEVVDDGDGGRVTFIKPNHKNLYDSIEYHRSYFDVCVLNDASNEVKEDGNTIEWFIETQRKALDI