Scaffold Ga0244775_10033719

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10033719
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4544
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F038670	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100337192	F038670	N/A	MITILGREIPNRLDELTIEQFENITELSNNKEIDPIDRHLQIFASLGIPEKEFFDYDVADFIQLVKEFNSSPKIEYPTIETLEVEGYNYTAKMKLTVRDTKLIEKIAINKPKGYVSEIAAIMFKRDDLTPAEHYADAHIKHKANLFKKLTADIAIPYLMFIATKINHQVDAGSDTPTDSPAEAVE
Ga0244775_100337194	F001883	N/A	MAYADTGEFNVLYPTRRRMANILKKIVDAEVVDGEGTLVSSIRINAKITGFQKLEIQIVAAYYFIFLNNGAYLWNGGVITPRDFVSQFTIALAEAGITAEIYTQYTQWLTKKYPLVEAIEVLERQQKLVYTFEALYAPPEFVQGFPLDV
Ga0244775_100337196	F004366	N/A	MNSLQAITNHIIAFYTAHKQVFKVGSDFKEQLYNFATQNEKYPLVYIVPSGVIPTENTTEFSFDIYCYDIIQKDRTNIITILSDTQQILNDLYIYYMDSTDYSFDVVGVPTFSPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI