Scaffold Ga0244775_10031932

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10031932
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4687
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015601	Metagenome / Metatranscriptome	253	Y
F054039	Metagenome / Metatranscriptome	140	N
F080054	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1003193211	F080054	GGAG	MSTQPNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLRKKKTVPRLFMPKTNDNF
Ga0244775_100319324	F015601	GGAG	MAGYTKEFLIDAFMSRYVGCDHLSIEKLERLEIMANDLYDRVGRDQFRVYACLDAEAIREYKTKVTA
Ga0244775_100319328	F054039	AGCAG	MIQVSPNYRKLAKVLNKTRKSLTQTCHELGIDVDDIEDHILIEVIDQCSHCNIWSQQLIKDLDSNPVCPVCVRLTGL